CRISPRPlanner · CRISPR / Prime · Popular
CRISPR / Prime Edit Planner
Paste your target and guides to get distances, RT/PBS helpers, edit physics, and a printable PDF plan validated against published designs.
HELIX TOOLS
Plan CRISPR and PCR edits like software.
Design edits, simulate products, and ship lab-ready PDFs from a single console. Built for in-silico-first workflows.
Genome IDE· Helix Tools suite
GPU-awareIn-silico firstWet-lab ready
Helix Tools by OmnisCoder · Bench ready, not just a demo.
Toolbox
Instrument panels for CRISPR, Prime Editing, PCR, and primers.
Core & batch suite
The six originals—planners, PCR, and primer QC—kept exactly where you expect them.
PCRPCR · Product scan
PCR Product Finder
Scan primer pairs, see GC/Tm and amplicon sizes instantly. Perfect for quick sanity checks and printable reports.
BatchPlanner · Batch multi-edit
Batch Edit Planner
CSV in, multi-edit campaign out. Guide/edit planning at scale for screening runs and multi-target programs.
PCRPCR · Batch scan
PCR Batch Finder
Paste primer pairs once and scan multiple amplicons; export CSV with product counts and flags.
PrimersPrimers · Quality clamp & Tm
Primer Quality Checker
GC%, Tm, clamp heuristics, and dimer checks. Sanity-check single primers or pairs before synthesis or PCR.
BatchPrimers · Batch ordering prep
Batch Primer Checker
Paste a list of primers to get GC, Tm, and flags in one table before you place an order.
CRISPR utilities
Experimental helpers for gRNAs, PAMs, prime editing templates, HDR donors, and reporting.
CRISPR utilityCRISPR utility
gRNA Validator
QC guides for GC content, homopolymers, and risky motifs before you order.
CRISPR utilityCRISPR utility
PAM Scanner
Scan sequences for PAM occurrences with surrounding context to pick cut sites fast.
CRISPR utilityCRISPR utility
PegRNA Checker
Validate pegRNA spacer, PBS, and RT lengths plus forbidden motifs before cloning.
CRISPR utilityCRISPR utility
Prime Editing Template Generator
Draft PBS/RT templates for PE2/PE3 with primer-friendly formatting and edit notes.
CRISPR utilityCRISPR utility
ssODN HDR Donor Builder
Build single-stranded donors with blocking mutations, silent tags, and length checks.
CRISPR utilityCRISPR utility
CRISPR Multiplex Planner
Coordinate multi-guide campaigns with spacing checks and per-target metadata.
CRISPR utilityCRISPR utility
PCR Amplicon Designer
Propose amplicons around edits for genotyping or NGS verification reads.
CRISPR utilityCRISPR utility
Silent PAM Destroyer
Introduce silent mutations to remove PAMs without breaking coding sequence.
CRISPR utilityCRISPR utility
Genomic Context Inspector
Summarize exon/intron, GC, and repeat context around a cut to de-risk edits.
CRISPR utilityCRISPR utility
Cas Variant Recommender
Suggest Cas variants by PAM and cut properties when default SpCas9 won’t land.
CRISPR utilityCRISPR utility
CRISPR Report Compiler
Bundle guides, donors, primers, and QC flags into a PDF handoff for the bench.